species:   Rhsol
pid:       PID0577
parent:    Rhi-milR-148
paralog:   
locus:     KB317742.1:28130-28206
matures:   ['UGGGCUGUAAGUCCUCAAGGG', 'CUUGAGACAAGUUCCGU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317742.1:28130-28206

11 out of bounds
25 alignments
23 proper strand
18 stranded perfect matches

      ********************                  ************************         
CGUAGGUCCCUUGAGACAAGUUCCGUGGAAGUAUACACAAUUCCCCUGGGCUGUAAGUCCUCAAGGGGGGAUAUACA
.(((..(((((((((((.(((((.(.((((..........)))).).)))))....)).))))))))).....))).
----------------------------------------------UGGGCUGUAAGUCCUCAAGGG---------- l=21 a=0 c
---------CUUGAGACAAGUUCCGU--------------------------------------------------- l=17 a=0 c*
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGG--------- l=22 a=7 ma
--------CCUUGAGACAAGUUCCGU--------------------------------------------------- l=18 a=0 ma*

---------uUUGAGACAAGUUCCGUGGAAG---------------------------------------------- l=22 a=1 
----------UUGAGACAAGUUCCGUGGAAG---------------------------------------------- l=21 a=1 
----------UUGAGACAAGUUuCGUGGAAGUA-------------------------------------------- l=23 a=1 
---------------ACAAGUUCCGUGG------------------------------------------------- l=13 a=1 
--------------------------------AUACACAAUUCCCCUGGGCUG------------------------ l=21 a=1 
---------------------------------UACACAAUUCCCCUGGGCUGUAAG-------------------- l=24 a=1 
---------------------------------------------CUGGGCUGUAAGUCCUCAAGGGG--------- l=23 a=1 
---------------------------------------------CUGGGCUGUAAGUCCUCAAGGGGGGAUAU--- l=29 a=1 
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGG--------- l=22 a=7 (ma)
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGa--------- l=22 a=1 
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGGG-------- l=23 a=4 
----------------------------------------------UGGGCUGUAAGUCCUCAgGGGGG-------- l=23 a=1 
----------------------------------------------UGGaCUGUAAGUCCUCAAGGGGGG------- l=24 a=1 
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGGGGAUAU--- l=28 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111000
fn-111
